Nice job for sure. Same thoughts I have with the stackable Alpine amps - a 2-channel for the door speakers and a mono channel for a rear sub.
Speaking of a rear sub in a GTS... To avoid covering the cabin vent on the passenger side or nixing the option to have my spare in on road trips, any acoustic problems having it centered by the glass latch and pointing at the passengers? This would of course be a small sub like the JL 6W3v3.
I actually just went with a standard pre-made 10" sub box covered in black carpet for my Alpine sub. It is centered in the hatch firing forward and up into the glass. I toyed around with the idea of a custom box mounted underneath the passenger side cabin "vent area", but others have suggested not to cover that up with a speaker box so I went with the easy-to-remove standard sub box.
Somewhat off topic here I guess...but as far as head units to run these aftermarket amps are concerned...I went with the JVC Kameleon and have been very happy with it with only a few exceptions. Sorry for the pre-install, poor quality picture, but he main thing that drew me to this unit was the fact that the entire front plate completely "blacks out" with the exception of the small white power-on light in the top right corner. It gives the illusion that there isn't even a stereo in place. You don't really see the control panel on the left most of the time. I guess I'm also a little "O.C.D." at times because I like my aftermarket head unit lighting to match the rest of the car and it is difficult to find a nice looking head unit that matches the orange interior lighting in a Gen 2. The screen background color can be easily changed to orange, red, etc.. with this one.
The downside...access to the CD player comes from a tilt-down mechanism that is kept from working because of the stereo/AC/shifter trim plate on a Gen 2. Not a big deal for me because I play all of my music through either the USB memory stick wire or through an actual MP3 player via the auxillary input wire. If you are a CD type of person, this may require some additional modification of the interior stereo trim panel.
Again...a little off topic here, but just some additional information for you...