Bruce,
Here's the risk in doing a lapping day without cleaning the deposits off first: The deposits are the only portion of the rotor that is touching the pads and will be absorbing heat while the other parts of the disk won't, those spots may heat treat into hard spots and ruin your rotors. It happened to me twice. But if they aren't really pulsing perhaps you'll be okay.
As for my battle with this, my new front rotors and new Brakemans began to have a problem with pad build up again, about 100 miles after installation (all street, no track). Today I decided to pull off the BrakeMan 3 track pads and put the OEM pads back on. When my brake guy turned the rotors, he found two hard spots beginning to form on the rotor, and this without doing a track day! This time I was fortunate in that he was able to sand them out, but last time they were so hard that I had to toss the rotors. Not sure what happened, and probably a different root cause than your issue. My guess is that for some reason the brakes were more or less dragging. The Brakeman 3s are so damn thick that you can barely get them in. Maybe they're dragging a little intermittently because of this thickness. Mark Jorgensen had a good theory that perhaps I have a little air in the lines and when the calipers try to release, the air is expandable and doesn't fully pull the calipers away the way pure fluid would. This air could be present due to a little fluid boil during brake bedding, even though the fluid was flushed prior to bedding the brakes. While I'm still not sure what's going on, it's time to try a different brake pad. The OEM pads worked well for me except the OEM fronts wore out much faster than I would expect (3-1/2 hard track days plus maybe 5,000 miles).
Your TA has different pads and pad compound than my Track Pack brakes do, so not sure what caused your issue. How thick are your front pads after all your track days? Jon B of Parts Rack has TA pads in stock if you need fresh ones. If I were you, I'd also pick up a set of front rotors as you'll need them eventually and it's nice to have them on hand.