I have had much experience in this area lately.
Current setup. Glass sills. Hitemp coating inside sills, roe wrap with high flow roe cats and roe mufflers.
Ran in the garage, they got warm to hot, but no damage. Drove for 30 minutes to a show and one heat bubble appeared.
It was a 30 min drive to a car show. When I arrived the sills were just warm. Went to register for the show. Came back and the sills were HOT with a bubble. What does than mean? While running the moving air flow keeps the sills at a warm state. Turn off and the radiant heat rises, making the top side and about an inch of the side of the sills HOT. The middle of the sides and bottom no where near as hot. Makes sense. The radiant heat from the exhaust rises.
What I am doing next as I refuse to use the stock shields?
More hitemp coating. This stuff is thick and does better with more coats. I took my sills off after coming home from that 30 minute drive. No more bubbles occured. When I got home I just ran cold water on the sills to keep them from getting to warm and pulled them off. It was at this time I realized the hitemp coating was working. While the outside of the sills were touchable, no way in hell was the inside. The coating was insulating like it should.
Also, once I apply more coating I am going to apply this.
http://store.summitracing.com/partdetail.asp?autofilter=1&part=THE%2D14001&N=0&autoview=sku Going to apply along the inside of the top and sides of the sills with high temp adhisve. My hope is it will "force" some of the radiant heat down and out the vents, at least enough to keep from damaging the sills. I should know by Sunday.
Oh, as for that heat bubble, when it cooled it sat back down, unless you look really hard you can not even see it. I LOVE THE PAINT that todays technology provides!