I can't speak from experience because I don't have either one of these systems. But one advantage that I've read about with twin turbos is that the top systems sometimes include AEM or other control electronics that can control the boost by gear and A/F ratio.
Having 1400HP sounds amazing, but the few 1000HP+ supercharged Vipers that I've seen at the track had traction problems in the first 3 gears even running drag radials.
And spinning the tires at 100MPH+ is just scary.
Whereas variable boost with twin turbos has the potential to limit HP to say 600HP in 1st, 750HP in second, and so on so that the Viper can actually put the power down effectively and not have the power (and safety) compromised by spinning the tires.
And I haven't heard about boost control for supercharged systems yet.
If I were upgrading, it would be to a supercharger though due to the big price difference, and smog compliance which could be tougher with a twin turbo setup.