The only way that crank is ever going to be repaired properly is if you pull it and send it to a crank shop. If they can polish it to spec you might be ok. If your threads are torn up you've got a whole can of worms waiting for you. Your first pic showed obvious signs of damage to to dampner, which in turn hurt the crank. The tolerance between the dampner is basically a press fit. If either part is not perfectly matched and machined your going to destroy the parts on assembly. If you polish out the parts to a loose fit, your dampner will fail to do its job, and damage the rotating assembly. A properly installed assembly does not need a pin kit contrary to the bs claimed by most. You do realize that your supposed to use a dampner assembly tool for installation, right? You already have a compromised situation, the last thing you need to do is damage the bearings because your swinging a sledge trying to fit a circle over a hexagon.